This page contains instructions for configuring your C++ toolchain on Linux in order to use RStan.
Using RStan requires either g++ version 4.9 and up or clang++ version 3.4 and up as they support the C++14 standard. Such a compiler is almost always available and is likely already installed system wide but may not be the default compiler on older systems such as RHEL7.
Installing from the repository
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It is possible to install a packaged (pre-built) RStan binary from your distribution's repositories.
Ubuntu users on R>=3.5.0 can install a binary version of RStan with
Ubuntu users on R 3.4.* or older should drop the '3.5' part of the above PPA's (e.g. use c2d4u instead of c2d4u3.5). More details here.
Debian users of DebianTesting can use
C++ toolchain configuration
The following will create or edit a configuration file for the C++ toolchain
Note that your compiler may have a version number postfix, such as g++-7 or clang++-6.0.
At this point, you can proceed to How to Use RStan if you have installed the binary version of it or otherwise build it from source.
Installing RStan from source
and then restart R and set the desired number of cores to use during installation
Finally, either do
to install the CRAN version of RStan from source or
to install the development version of RStan from GitHub.
Special Note: CentOS 7.0
When installing rstan from source on CentOS 7, even if you have a compatible gcc compiler installed, you may have an error like
pop up and terminate your install (or, after the install, your library load). This is a known issue on CentOS, and can often be worked around by ensuring that the LD_LIBRARY_PATH is set properly. To do this as a one-time fix, run
before launching R and running one of the above commands. This can be setup as a permanent fix in the usual fashion. If you are using RStudio Server and want rstan to work for all your users, you can set the LD_LIBRARY_PATH in /etc/rstudio/rserver.conf, as
which will ensure each session launched has appropriate access.
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- Then proceed to How to Use RStan